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--- publications [2025/05/12 08:35] – Cris' nanoparticle manuscript is submitted ptsp5h
+++ publications [2025/10/08 19:57] (current) – [Contrast-enhanced microCT method for assessing peri-implant soft tissue vascularization] ptsp5h
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 ====== Submitted OR In revision ======
-=====  Synchrotron Microbeam Radiotherapy in combination with gold nanoparticles improves control of mouse melanoma =====
-  * Cristian Fernandez-Palomo, Marine Potez, David Haberthür, Verdiana Trappetti, Paolo Pellicioli, Jennifer Fazzari, Michael Grams, Ruslan Hlushchuk, Valentin Djonov
-  * Submitted to [[ https://www.redjournal.org/ | International Journal of Radiation Oncology - Biology - Physics (known as the Red Journal) ]] as Manuscript ID MIM.2025.0006
+===== Contrast-enhanced microCT method for assessing peri-implant soft tissue vascularization =====
+  * Oleksiy-Zakhar Khoma, Benjamin Bellon, Rebecca Sandgren, Benjamin E. Pippenger, David Haberthür, Ruslan Hlushchuk
+  * Submitted to the [[ https://onlinelibrary.wiley.com/journal/16000765 | Journal of Periodontal Research ]] as manuscript ID 2877355
+===== Downregulation of WT1 transcription factor gene expression is required to promote myocardial fate =====
+  * Ines Joao Marques, Nadia Mercader, Alexander Ernst, Andrés Sanz-Morejón, Xavier Langa, Tanja Hetke, Adolfo Odriozola, Benoît Zuber; David Haberthür; Ruslan Hlushchuk; Carlos Torroja; Uta Naumann; Christoph Englert
+  * preprint on bioRxiv: [[https://doi.org/10.1101/2021.07.06.451274 |doi:10.1101/2021.07.06.451274 ]]
+  * submitted to [[https://journals.plos.org/plosbiology/ | PLOS Biology ]]
+====== 2025 ======
 ===== Microscopic dual-energy computed tomography (microDECT) imaging of animal tissues: the colour of X-rays =====
   * Stephan Handschuh, Ursula Reichart, Stefan Kummer, Simone Gabner, Bernhard Ruthensteiner, Andy Sombke, Thomas Schwaha, Christian J. Beisser, Patrick Lemell, David Haberthür, Ruslan Hlushchuk, Rudolf Glueckert, Brian D. Metscher, Martin Glösmann
-  * Submitted to [[ https://www.degruyter.com/journal/key/mim/html | Methods in Microscopy]] as Manuscript ID MIM.2025.0006
+  * [[ https://www.degruyterbrill.com/journal/key/mim/html | Methods in Microscopy ]]
+    * ISSN: [[https://portal.issn.org/resource/issn/2942-3899|  2942-3899 ]]
+  * [[  https://doi.org/10.1515/mim-2025-0006 | doi:10.1515/mim-2025-0006 ]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1515/mim-2025-0006"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1515/mim-2025-0006"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
+  * [[BibTeX:Handschuh2025 | BibTeX]]
+=====  Synchrotron Microbeam Radiotherapy in combination with gold nanoparticles improves control of mouse melanoma =====
+  * Cristian Fernandez-Palomo, Marine Potez, David Haberthür, Verdiana Trappetti, Paolo Pellicioli, Jennifer Fazzari, Michael Grams, Ruslan Hlushchuk, Valentin Djonov
+  * [[ https://www.redjournal.org/ | International Journal of Radiation Oncology - Biology - Physics ]] (known as the Red Journal)
+    * ISSN: [[https://portal.issn.org/resource/issn/0360-3016 | 0360-3016]]
+    *  [[ https://www.scopus.com/sourceid/17191 | CiteScore]]: 10.9 (2024)
+  * [[ https://doi.org/10.1016/j.ijrobp.2025.07.1427 | doi:10.1016/j.ijrobp.2025.07.1427 ]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1016/j.ijrobp.2025.07.1427"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1016/j.ijrobp.2025.07.1427"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
+  * [[BibTeX:Fernandez2025 | BibTeX]]
 ===== MicroCT-Based Imaging of Microvasculature in Bone and Peri-Implant Tissues =====
   * David Haberthür, Oleksiy-Zakhar Khoma, Tim Hoessly, Eugenio Zoni, Marianna Kruithof-de Julio, Stewart D. Ryan, Myriam Grunewald, Benjamin Bellon, Rebecca Sandgren, Stephan Handschuh, Benjamin E. Pippenger, Dieter Bosshardt, Valentin Djonov, Ruslan Hlushchuk
-  * preprint on bioRxiv: [[https://doi.org/10.1101/2023.03.08.531678 | doi:10.1101/2023.03.08.531678]]
-  * Under revision for [[https://www.sciencedirect.com/journal/tomography-of-materials-and-structures | Tomography of Materials and Structures]] as TMATER-D-25-00003R1.
   * The most-up-to-date canonical version of the manuscript is available via its [[https://github.com/microct-ana-unibe-ch/microvasculature-manuscript| GitHub repository]] here: http://microct.ch/microvasculature-manuscript/
+  * [[ https://www.sciencedirect.com/journal/tomography-of-materials-and-structures | Tomography of Materials and Structures ]]
+    * ISSN: [[https://portal.issn.org/resource/issn/2949-673X | 2949-673X]]
+  * [[https://doi.org/10.1016/j.tmater.2025.100074| doi:10.1016/j.tmater.2025.100074 ]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1016/j.tmater.2025.100074"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1016/j.tmater.2025.100074"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
+  * [[BibTeX:Haberthuer2025 | BibTeX]]
-===== Downregulation of WT1 transcription factor gene expression is required to promote myocardial fate =====
+===== Über die Unterteilung der Cichliden und die Entstehung ihrer Familiennamen =====
-  * Ines Joao Marques, Nadia Mercader, Alexander Ernst, Andrés Sanz-Morejón, Xavier Langa, Tanja Hetke, Adolfo Odriozola, Benoît Zuber; David Haberthür; Ruslan Hlushchuk; Carlos Torroja; Uta Naumann; Christoph Englert
+  * Erwin Schraml
-  * preprint on bioRxiv: [[https://doi.org/10.1101/2021.07.06.451274 |doi:10.1101/2021.07.06.451274 ]]
+  * [[ https://dcg-online.de/die-vereinszeitschrift-der-deutschen-cichliden-gesellschaft-e-v-dcg/ | DCG-Informationen – Vereinszeitschrift der Deutschen Cichliden-Gesellschaft e.V.]]
-  * submitted to [[https://journals.plos.org/plosbiology/ | PLOS Biology ]]
+  * Not really a proper scientific publication, but an awesome opportunity for outreach. Erwin Schraml contacted me after reading [[https://wiki.davidhaberthuer.ch/publications?do=#microtomographic_investigation_of_a_large_corpus_of_cichlids |our manuscript on the datawrangling of the tomographic datasets of a large corpus of Cichlids]]. He asked if I could prepare him (a layman) some nice pictures out of one of the tomographic datasets. In the end this was published in the monthly bulletin of the [[https://dcg-online.de/ | Deutsche Cichliden-Gesellschaft]].
+  * {{ ::schraml-2025-unterteilung_cichliden_neu.pdf | PDF }}, 3.5 MB
-====== 2025 ======
 ===== Contrast-Enhanced Micro-CT Imaging of a Foetal Female Pelvic Floor Reveals Anatomical Details =====
   * Dea Aaldijk, Sebastian Halm, Diana N. Liashchenko, David Haberthür
   * The full high-resolution dataset out of which we generated the figures is available online for viewing on [[https://webknossos.org/datasets/Institute_of_Anatomy/Foetus02_Lugol_15pct_152d_rec/view | WEBKNOSSOS]]
-  * preprint on bioRxiv: [[https://doi.org/10.1101/2024.11.10.622888 | doi:10.1101/2024.11.10.622888 ]]
+  * [[https://journals.plos.org/plosone/ | PLOS One]]
-  *  [[https://journals.plos.org/plosone/ | PLOS One]] is "pleased to inform [us that the] manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements."
+    * ISSN: [[https://portal.issn.org/resource/issn/1932-6203 | 1932-6203]]
+    *  [[ https://www.scopus.com/sourceid/10600153309 | CiteScore]]: 6.2 (2023)
+  * [[https://doi.org/10.1371/journal.pone.0314261| doi:10.1371/journal.pone.0314261]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1371/journal.pone.0314261"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1371/journal.pone.0314261"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
+  * [[BibTeX:Aaldijk2025 | BibTeX]]
 ===== Location-specific pathology analysis of monopodial airways in a rabbit model of bronchopulmonary dysplasia =====